CCP SyneRBI

Collaborative Computational Project in Synergistic Reconstruction for Biomedical Imaging

Downloads

 

We use Github as a repository for the CCP SyneRBI software, see https://github.com/SyneRBI/ and our software framework page for more info.

You can install our SIRF software in a few different ways, via

  • pre built CCPSyneRBI Virtual Machine, download below. This is suggested to familiarize yourselves with the software. Check our VM documentation for further info
  • Docker, or
  • by building the software yourself.

Please check our wiki page for more information. Here we provide links to downloadable files.

CCPSyneRBI Virtual Machine

DOI



Older versions of the VM can be found with DOI (digital object identifier) 10.5281/zenodo.3552234. Please be aware that the file size is about 5 Gb.

The Virtual Machine has been created with VirtualBox 7.0.6 and with the VirtualBox Guest Additions (VGA) pre-installed.

Known issues:If you have a different version of VirtualBox than 7.0.6 you might experience issues, especially running the X server. We therefore strongly recommend to sync your VGA version

Docker

Pre-built SIRF with Python3 bindings are provided by our Docker Container.
Please find further information on our pre-built Docker images here.

Demo Data Files

Data shared on the Zenodo community can be found at https://www.zenodo.org/communities/synerbi/search?page=1&size=20&q=&type...

The two Siemens raw files that are needed for certain demos are currently available 

Zenodo Community

We have our own PET-MR community and SyneRBI community on Zenodo, where you can find example data sets, the VM etc.

Supporting Materials

The synergistic reconstruction training

Tools associated with the Leeds 2016 course are available here: https://github.com/SyneRBI/tools

Legacy versions

Previous versions VM were SIRF 1.1.1 (10GB hard disk), SIRF 1.1.1 (30 GB hard disk), SIRF 0.9.0 and  SIRF 0.9.2.