File List

Here is a list of all documented files with brief descriptions:

[detail level 123456789]

▼ sources
▼ SIRF
▼ src
▼ common
▼ gmi
gmi_csirf.cpp	The executable for generating Matlab interface for cgadgetron library
▼ include
► sirf
► common
ANumRef.h
csirf.h
DataContainer.h
deprecate.h
GeometricalInfo.h
getenv.h
iequals.h	Case insensitive string comparison sirf::iequals
ImageData.h
JacobiCG.h
multisort.h
Operator.h
► Syn
utilities.h	C++ synergistic utilities
syn_utilities.cpp	C++ synergistic utilities
▼ iUtilities
▼ gmi
gmi.cpp	The executable for generating Matlab interface for iutilities library
▼ include
► sirf
► iUtilities
DataHandle.h	Execution status type and wrappers for C++ objects
iutilities.h
LocalisedException.h
iutilities.cpp	C interface to DataHandle
▼ Registration
▼ cReg
► include
► sirf
► Reg
AffineTransformation.h	Class for affine transformations
cReg.h
cReg_p.h
ImageWeightedMean.h	Perform weighted mean of multiple images
NiftiBasedRegistration.h	Base class for all NIfTI-based registrations
NiftiImageData.h	Base class for SIRF nifti image data
NiftiImageData3D.h	3D Nifti image
NiftiImageData3DDeformation.h	Class for deformation SIRF image data
NiftiImageData3DDisplacement.h	Class for displacement SIRF image data
NiftiImageData3DTensor.h	Class for tensor SIRF image data
NiftyAladinSym.h	NiftyReg's aladin class for rigid and affine registrations
NiftyF3dSym.h	NiftyReg's f3d class for non-rigid registrations
NiftyRegistration.h	Base class for all NiftyReg registrations
NiftyResample.h	Resampling class based on nifty resample
NiftyResampler.h	Resampling class based on nifty resample
NonRigidTransformation.h	Base class for transformations
Parser.h	Small class to parse parameter files
ParserKey.h	Parser keys for 0, 1 and 2 arguments
Quaternion.h	Class for quaternions
Registration.h	Base class for all SIRF registration
Resample.h	Abstract resampling base class
SPMRegistration.h	Wrapper around SPM's registration class
Transformation.h	Base class for transformations
► tests
test_cReg.cpp	Test for creation of a weighted-mean image
AffineTransformation.cpp	Class for affine transformations
ImageWeightedMean.cpp	Perform weighted mean of multiple images
NiftiBasedRegistration.cpp	Base class for all NIfTI-based registration algorithms
NiftiImageData.cpp	Base class for SIRF image data
NiftiImageData3D.cpp	Base class for 3D SIRF image data
NiftiImageData3DDeformation.cpp	Class for deformation field transformations
NiftiImageData3DDisplacement.cpp	Class for displacement field transformations
NiftiImageData3DTensor.cpp	Class for tensor SIRF image data
NiftyAladinSym.cpp	NiftyReg's aladin class for rigid and affine registrations
NiftyF3dSym.cpp	NiftyReg's f3d class for non-rigid registrations
NiftyRegistration.cpp	Base class for all NiftyReg registration algorithms
NiftyResampler.cpp	Resampling class based on nifty resample
Quaternion.cpp	Class for affine transformations
Registration.cpp	Base class for all SIRF registration
Resample.cpp	Abstract resampling base class
sirf_affine_to_disp.cpp	Convert affine transformation matrix to displacement or deformation field image(s)
sirf_change_datatype.cpp	Change the datatype of a nifti image (e.g., int->float)
sirf_crop_image.cpp	Crop a nifti image
sirf_flip_or_mirror_image.cpp	Flip or mirror image
sirf_inverse_transform.cpp	Crop a nifti image
sirf_nifti_maths.cpp	Crop a nifti image
sirf_print_nifti_info.cpp	Dump info of one or more nifti images
sirf_tensor_split_join.cpp	Split or join tensor images (i.e., deformation or displacement fields)
SPMRegistration.cpp	Implementation for sirf::SPMRegistration
Transformation.cpp	Base class for transformations
▼ mReg
► gmi
gmi_xreg.cpp	The executable for generating Matlab interface for cstir library
printer.h
▼ NiftyMoMo
► include
► sirf
► NiftyMoMo
BSplineTransformation.h
Transformation.h
▼ Synergistic
▼ cSyn
► include
► sirf
► Syn
utilities.h	C++ synergistic utilities
utilities.cpp	C++ synergistic utilities
▼ tests
test_cSynergistic.cpp	Synergistic tests
sirf_convert_image_type.cpp	Convert any SIRF image type into any other
sirf_do_images_match.cpp	Check if two SIRF images match to a given precision
sirf_registration.cpp	Perform registration with any types of SIRF image and any SIRF registration algorithm
sirf_resample.cpp	Perform resampling with any type of SIRF image and any SIRF resampling algorithm
▼ xGadgetron
▼ cGadgetron
► include
► sirf
► Gadgetron
cgadgetron.h
cgadgetron_p.h
cgadgetron_shared_ptr.h
chain_lib.h	Specification file for the library of SIRF generators of xml-definitions of Gadgetron gadget chains
FourierEncoding.h	File for cartesian fourier encoding and trajectory setting
gadget_lib.h	Specification file for the library of SIRF generators of xml-definitions of Gadgetron gadgets
gadgetron_client.h	Utilities for data exchange between SIRF and Gadgetron server
gadgetron_data_containers.h	Specification file for data container classes for Gadgetron data
gadgetron_image_wrap.h	Specification file for a wrapper class for ISMRMRD::Image
gadgetron_x.h	Specification file for extended Gadgetron functionality classes
NonCartesianEncoding.h	Specification file for non-cartesian Fourier encoding
TrajectoryPreparation.h	Utilities for setting trajectories in ISMRMRD data
xgadgetron_utilities.h	Various utilities used by SIRF Gadgetron extensions
► tests
mrtest_auxiliary_funs.cpp	Auxiliary functions for MR related C++ tests
mrtest_auxiliary_funs.h	Auxiliary functions for MR related C++ tests
mrtests.cpp	MR related C++ tests
mrtests_prep_testdata.cpp	Auxiliary functions for MR related C++ tests
gadgetron_client.cpp	Implementation file for SIRF Gadgetron client
gadgetron_data_containers.cpp	Implementation file for SIRF data container classes for Gadgetron data
gadgetron_x.cpp	Implementation file for extended Gadgetron functionality classes
NonCartesianEncoding.cpp	Implementation file for non-cartesian Fourier encoding
TrajectoryPreparation.cpp	Utilities for setting trajectories in ISMRMRD data
▼ mGadgetron
► gmi
gmi_xgadgetron.cpp	The executable for generating Matlab interface for cgadgetron library
▼ xSTIR
▼ cSTIR
► include
► sirf
► STIR
cstir.h
cstir_p.h
stir_data_containers.h	Specification file for data handling types not present in STIR
stir_types.h
stir_x.h	Specification file for extended STIR functionality classes
► tests
envar.h
getenv.h
handle.h
main.cpp
object.h
run_test4.cpp
test1.cpp
test2.cpp
test3.cpp
test4.cpp
test5.cpp
tests.h
▼ mSTIR
► gmi
gmi_xstir.cpp	The executable for generating Matlab interface for cstir library
printer.h